Cloud Software Platform

PhycoSight

Cloud analytics for phytoplankton data

PhycoSight extends your ARTiMiS workflow into the cloud — centralizing data, enabling team collaboration, surfacing cross-sample trends, and training custom classifiers from your annotations.

6

Core Modules

6

Chart Types

Multi-User

Collaboration

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Free trial available — limited samples and storage to explore the platform before committing.

PhycoSight — Explorer

Core Capabilities

What PhycoSight Does

Cloud-powered tools for collaborative annotation, longitudinal analytics, and custom classifier training.

Samples

Browse your sample library in gallery or list view. Filter by status, search by name, and drill into any sample to inspect particles, confidence histograms, and class distributions.

Explorer

Aggregate analytics across campaigns, series, or individual samples. Stacked area charts, scatter plots with marginal distributions, parallel coordinates, and ridgeline plots — all exportable as SVG, PNG, or CSV.

Annotations

Three-panel annotation workspace with a particle grid, domain-aware label selector with certainty levels, and a detail inspector. Supports multi-domain labels, bulk operations, prediction upgrades, and keyboard shortcuts.

Collections

Build curated particle sets organized by label domain. Assemble collections into compendia that feed directly into the classification training pipeline.

Discovery

Generate dimensionality-reduction atlases (PCA, UMAP, t-SNE) and explore structure in feature space. Constellation clustering reveals natural groupings you can annotate directly.

Classification

End-to-end classifier pipeline: configure a hierarchical classification tree, export versioned datasets with diversity metrics, train on cloud infrastructure, evaluate with interactive confusion matrices, and deploy ONNX packages to your devices.

The Pipeline

How It Works

From device capture to custom classifier deployment — a seamless pipeline.

1

Capture & Sync

ARTiMiS captures samples on-device. Data syncs automatically to PhycoSight when connected.

CLOUD
PARTICLES ANNOTATOR Domain Taxonomy Label Diatom Chlorella Scenedesmus Cyanobacteria Certainty Definite Likely Uncertain INSPECTOR Features Prediction Chlorella (94%) Annotations Chlorella - Definite No annotations
2

Explore & Annotate

Browse samples and particles across your library. Open the annotation workspace to label particles by domain with certainty tracking — individually or in bulk.

3

Analyze Trends

Aggregate analytics across campaigns and series with stacked area charts, scatter plots, parallel coordinates, and ridgeline plots. Export any chart as SVG, PNG, or CSV.

Concentration Time
Dataset Training .ONNX Deploy
4

Train & Deploy

Curate collections into compendia, define a hierarchical classification tree, export versioned datasets, train and evaluate on cloud infrastructure, and deploy ONNX packages back to your devices.

End-to-End Training

Classification Pipeline

Build custom classifiers from your annotations — a guided 6-stage workflow from tree definition to ONNX deployment.

1

Overview

Define pipeline scope and classification goals.

2

Tree Editor

Configure hierarchical classifier nodes — label domains, compendia, model architectures, and parent-child linkages.

3

Dataset Export

Freeze train/val/test splits with per-class diversity metrics and balance warnings.

4

Training

Submit jobs to cloud infrastructure with real-time progress tracking.

5

Evaluation

Interactive confusion matrices, per-class precision/recall/F1, misclassification browser, and node approval workflow.

6

Deployment

Generate ONNX deployment packages for device-side inference.

ARTiMiS devices ship with pre-trained classifiers for morphology, taxonomy, and commercial green algae. PhycoSight lets you build custom classifiers that go beyond the defaults.

What Ships With Your Device vs. What the Cloud Adds

ARTiMiS and SampleManager deliver a complete on-device experience. PhycoSight extends it into the cloud.

Capability ARTiMiS + SampleManager PhycoSight
Particle detection & feature extraction Included Included
Baseline AI classification Included Included
Local annotation & correction Included Included
Data export (images, CSV, labels) Included Included
Bring your own ONNX model Included Included
Cloud data browsing & sample gallery — Included
Multi-domain annotation with certainty levels — Included
Multi-user access & team management — Included
Cross-sample analytics (6 chart types) — Included
Dimensionality reduction atlases (PCA/UMAP/t-SNE) — Included
Unsupervised clustering & constellation review — Included
Managed classifier training (6-stage pipeline) — Included
Dataset curation & versioning — Included
Interactive evaluation & confusion matrices — Included

Better Together

PhycoSight starts with ARTiMiS

ARTiMiS is the automated flow imaging microscope that captures your data. PhycoSight is the cloud platform that makes it collaborative, longitudinal, and continuously improving.

  • Fully automated flow imaging microscopy — load a sample, retrieve results
  • On-device AI classification at 95% accuracy with 3–5 minutes of operator time
  • No external computer required — runs entirely on embedded hardware
  • Data syncs directly to PhycoSight for cloud analytics and collaboration
Learn More About ARTiMiS

ARTiMiS

Autonomous Real-Time Microbial Scope

95%

Accuracy

$8K

Setup Cost

3-5 min

Operator Time

Request a PhycoSight Demo

Be among the first to access cloud analytics for your phytoplankton data. Academic discounts available.

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Questions? Contact us at info@skopii.com